# ENCODE Toolkit

20 MCP tools \+ 48 skills for ENCODE Project genomics — search, download, pipelines

Canonical: https://claudelist.com/listings/mcp-reg-io-github-ammawla-encode-toolkit-3f820a4639

Category: MCP Servers

Source: community · ammawla

Source checked: 2026-10-14

Website: https://www.claudemcp.org/mcp/registry/io-github-ammawla-encode-toolkit-3f820a4639da.html

Publisher description: 20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

## Install or set up

1. Review the publisher repository and npm package `encode-toolkit@0.3.0-beta.5` before running it. The MCP Registry declares this package as a stdio server.
2. Install Node.js, then run the command below in your Claude Code project. Check the publisher README for any account or configuration requirements.
3. Restart Claude Code and use `/mcp` to confirm the connection and review its tools and permissions.

```sh
claude mcp add mcp-io-github-ammawla-encode-toolkit-3f820a -- npx -y encode-toolkit@0.3.0-beta.5
```

Installation guide: https://github.com/ammawla/encode-toolkit